CLONING OF SHRNA SEQUENCE SPECIFIC TO ELASTASE OF MACROPHAGES INTO EXPRESSION VECTOR PGPV-17019250
Abstract
BACKGROUND: Macrophage elastase/MMP12 is one of the most important matrix metalloproteinase that cells secrete into the extracellular space. Secreted and activated MMP12 is capable to digest the proteins of extracellular matrix, such as fibronectin, laminin and elastin, facilitating the migration of immune cells to the inflamed tissue.
AIM: The aim of our study was to create a vector that would express a specific small interfering RNA (shRNA) to suppress the expression of human macrophage elastase.
METHODS: The online tool "siRNA Wizard" was used to design cDNA encoding shRNA specific to human macrophage elastase. The restriction endonucleases BamH1 and EcoRI, as well as a commercial T4 DNA ligase we used to clone the named cDNA into the expression vector pGPV-17019250. The presence of the cDNA in the vector was confirmed by PCR and DNA-sequencing with vector-specific primers.
RESULTS: In this study, we obtained the sequence of cDNA, encoding shRNA specific to macrophage elastase. We also cloned the named cDNA into the expression vector pGPV-17019250 and confirmed its exact location in the vector.
CONCLUSION: The generated expression vector pGPV-17019250-EM designated to suppress human macrophage elastase in cultured cells.
References
2. Hunninghake GM, Cho MH, Tesfaigzi Y, et al. MMP12, lung function, and COPD in high-risk populations // N. Engl. J. Med. 2009;361(27):25992608. https://doi.org/10.1056/NEJMoa0904006.
3. Goncalves I, Bengtsson E, Colhoun HM, et al. Elevated plasma levels of MMP-12 are associated with atherosclerotic burden and symptomatic cardiovascular disease in subjects with type 2 diabetes // Arterioscler. Thromb. Vasc. Biol. 2015;35(7):17231731. https://doi.org/10.1161/ATVBAHA.115.305631.
4. He H, Olesen CM, Pavel AB, et al. Tapestrip proteomic profiling of atopic dermatitis on dupilumab identifies minimally invasive biomarkers // Front. Immunol. 2020;11:1768. https://doi.org/10.3389/fimmu.2020.01768.
5. Starodubtseva NL, Sobolev VV, Soboleva AG, et al. Expression of genes for metalloproteinases (MMP-1, MMP-2, MMP-9, and MMP-12) associated with psoriasis // Genetika. 2011;47(9):1254-1261.
6. Tewari A, Grys K, Kollet J, et al. Upregulation of MMP12 and its activity by UVA1 in human skin: potential implications for photoaging // J. Invest. Dermatol. 2014;134(10):2598-2609. https://doi.org/10.1038/jid.2014.173.
7. Kerkelä E, Ala-Aho R, Jeskanen L, et al. Expression of human macrophage metalloelastase (MMP-12) by tumor cells in skin cancer // J. Invest. Dermatol. 2000;114(6):1113-1119. https://doi.org/10.1046/j.1523-1747.2000.00993.x.
8. Ujfaludi Z, Tuzesi A, Majoros H, et al. Coordinated activation of a cluster of MMP genes in response to UVB radiation // Sci. Rep. 2018;8(1):2660. https://doi.org/10.1038/s41598-018-20999-6.
9. Avola R, Granata G, Geraci C, et al. Oregano (Origanum vulgare L.) essential oil provides anti-inflammatory activity and facilitates wound healing in a human keratinocytes cell model // Food. Chem. Toxicol. 2020;144:111586. https://doi.org/10.1016/j.fct.2020.111586.
10. Huth L, Marquardt Y, Heise R, et al. Bifonazole exerts anti-Inflammatory effects in human three-dimensional skin equivalents after UVB or histamine challenge // Skin Pharmacol. Physiol. 2019;32(6):337-343. https://doi.org/10.1159/000502213.
11. Swindell WR, Bojanowski K, Chaudhuri RK. A zingerone analog, acetyl zingerone, bolsters matrisome synthesis, inhibits matrix metallopeptidases, and represses IL-17A target gene expression // J. Invest. Dermatol. 2020;140(3):602-614.e15. https://doi.org/10.1016/j.jid.2019.07.715.
12. Swindell WR, Bojanowski K, Chaudhuri RK. A standardized Terminalia chebula fruit extract alters the expression of genes associated with skin architecture and barrier formation // Eur. J. Dermatol. 2020;30(5):469-492. https://doi.org/10.1684/ejd.2020.3882.
13. Chung JH, Seo JY, Lee MK., et al. Ultraviolet modulation of human macrophage metalloelastase in human skin in vivo // J. Invest. Dermatol. 2002;119(2):507-12. https://doi.org/10.1046/j.1523-1747.2002.01844.x.
14. NCBI Nucleotide / The official website of National center for biotechnology information. URL: http://www.ncbi.nlm.nih.gov/nuccore/.
15. Ren Y, Gong W, Zhou H, et al. siRecords: a database of mammalian RNAi experiments and efficacies // Nucleic Acids Res. 2009;37(Database issue):D146-149.
16. blastn suite / The official website of National center for biotechnology information. URL: https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE =BlastSearch.
17. Kibbe WA. OligoCalc: an online oligonucleotide properties calculator // Nucleic Acids Res. 2007.35(Web Server issue):W43-46.
18. siRNA Wizard / The official website of Invivogen https://www.invivogen.com/sirnawizard/.
19. Vogelstein B, Gillespie D. Preparative and analytical purification of DNA from agarose // Proc. Natl. Acad. Sci. USA. 1979;76(2):615-619.
20. Huff JP, Grant BJ, Penning CA, Sullivan KF Optimization of routine transformation of Escherichia coli with plasmid DNA // Biotechniques. 1990;9(5): 570-577.
21. Rueden CT, Schindelin J, Hiner MC, et al. ImageJ2: ImageJ for the next generation of scientific image data // BMC Bioinformatics. 2017;18:529.
23. Churg A, Wang RD, Tai H, et al. Macrophage metalloelastase mediates acute cigarette smoke-induced inflammation via tumor necrosis factor-alpha release // Am. J. Respir. Crit. Care Med. 2003;167(8):1083-1089. https://doi.org/10.1164/rccm.200212-1396OC.
24. Могулевцева Ю., Мезенцев A.В. Клонирование последовательности малой ингибирующей РНК, специфичной к металлопротеиназе 1 человека, в экспрессионный вектор pGPV-17019250 // Wschodnioeuropejskie Czasopismo Naukowe. 2016. №9. Ч.1. C.85-92. [Mogulevtseva J, Mezentsev AV. Cloning of small interference RNA specific to human metalloproteinase 1 into the expression vector pGPV-17019250. Wschodnioeuropejskie Czasopismo Naukowe. 2016;(9).Pt.1:85-92. (in Russ)]
25. Могулевцева Ю., Мезенцев A.В. Молекулярный дизайн и клонирование контрольной РНК для проведения экспериментов по РНК-интерференции интерстициальной коллагеназы человека // Развитие современной науки: теоретические и прикладные аспекты. 2016. №6. С.70-77. [Mogulevtseva J, Mezentsev AV. Molecular design and cloning of scramble RNA to conduct experiments on silencing the human interstitial collagenase. Progress in modern science: theoretical and applied aspects. 2016;(6):70-77.]
26. Mogulevtseva JA, Mezentsev AV. Cloning a sequence of small hairpin RNA directed to human gelatinase B into the expression vector pGPV17019250. Wschodnioeuropejskie Czasopismo Naukowe. 2019;(44).Pt.1.32-38.
27. Mogulevtseva JA, Mezentsev AV. Molecular design and cloning of scrambled smallhairpin RNA for knocking down human gelatinase B // The Eurasian Union of Scientists. 2019;5(62).Pt.4:17-23. https://doi.org/10.31618/ESU.2413-9335.2019.4(62):111.
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